Package: HTGM4D
Version: 1.0
Date: 2026-04-29
Title: Four Dimensional High Throughput 'GoMiner'
Authors@R: c(
          person("Barry", "Zeeberg", email = "barryz2013@gmail.com",
                role = c("aut", "cre")))
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Author: Barry Zeeberg [aut, cre]
Depends: R (>= 4.2.0)
Imports: minimalistGODB, GoMiner, HTGM, HTGM2D, grDevices, stats,
        gplots, vprint, randomGODB, HGNChelper, png, magick, svglite,
        utils, graphics
LazyData: true
LazyDataCompression: xz
Description: The Gene Ontology (GO) Consortium
        <https://geneontology.org/> organizes genes into hierarchical
        categories based on biological process (BP), molecular function
        (MF) and cellular component (CC, i.e., subcellular
        localization). Tools such as 'GoMiner' (see Zeeberg, B.R.,
        Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>)
        can leverage GO to perform ontological analysis of microarray
        and proteomics studies, typically generating a list of
        significant functional categories. Microarray studies are
        usually analyzed with BP, whereas proteomics researchers often
        prefer CC. To capture the benefit of both of those ontologies,
        I now present an enhancement of the existing two-dimensional
        version of 'High-Throughput GoMiner' ('HTGM2D'), which is
        called 'HTGM4D'. The original 'HTGM2D' is augmented by adding
        two instances of the original 'GoMiner' genes versus categories
        heatmaps, aligned with the categories axes of the 'HTGM2D'
        heatmap.
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-07-02 08:12:26 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libssl-dev zlib1g-dev
Repository: https://barryzee.r-universe.dev
Date/Publication: 2026-05-02 11:11:05 UTC
RemoteUrl: https://github.com/cran/HTGM4D
RemoteRef: HEAD
RemoteSha: 1dbb0905003c967fca3017bca79bbca9f51a5962