{ "_id": "6a4f4e9521b18e15485006f7", "Package": "randomGODB", "Version": "1.1", "Date": "2026-01-08", "Title": "Random GO Database", "Authors@R": "c(\nperson(\"Barry\", \"Zeeberg\", email = \"barryz2013@gmail.com\",\nrole = c(\"aut\", \"cre\")))", "Maintainer": "Barry Zeeberg ", "Author": "Barry Zeeberg [aut, cre]", "Description": "The Gene Ontology (GO) Consortium\n organizes genes into hierarchical\ncategories based on biological process (BP), molecular function\n(MF) and cellular component (CC, i.e., subcellular\nlocalization). Tools such as 'GoMiner' (see Zeeberg, B.R.,\nFeng, W., Wang, G. et al. (2003) )\ncan leverage GO to perform ontological analysis of microarray\nand proteomics studies, typically generating a list of\nsignificant functional categories. The significance is\ntraditionally determined by randomizing the input gene list to\ncomputing the false discovery rate (FDR) of the enrichment\np-value for each category. We explore here the novel\nalternative of randomizing the GO database rather than the gene\nlist.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-09 07:25:47 UTC", "User": "root" }, "Repository": "https://barryzee.r-universe.dev", "Date/Publication": "2026-01-10 06:10:02 UTC", "RemoteUrl": "https://github.com/cran/randomGODB", "RemoteRef": "HEAD", "RemoteSha": "9749507ead3065281c89f8989402c4cb023e8d27", "_user": "barryzee", "_type": "src", "_file": "randomGODB_1.1.tar.gz", "_fileid": "https://r2.ropensci.org/2de300b935ce03721b46ec379ab0e8dbd3b4ac25bbbdff14eef53a163d319db0", "_filesize": 911665, "_sha256": "2de300b935ce03721b46ec379ab0e8dbd3b4ac25bbbdff14eef53a163d319db0", "_expires": "2026-10-17T07:32:35.000Z", "_created": "2026-07-09T07:25:47.000Z", "_published": "2026-07-09T07:32:37.529Z", "_jobs": [ { "job": 86062968092, "time": 176, "config": 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"check": "OK", "artifact": "8191876061" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/barryzee/actions/runs/29001230299", "_status": "success", "_upstream": "https://github.com/cran/randomGODB", "_commit": { "id": "9749507ead3065281c89f8989402c4cb023e8d27", "author": "Barry Zeeberg ", "committer": "cran-robot ", "message": "version 1.1\n", "time": 1768025402 }, "_maintainer": { "name": "Barry Zeeberg", "email": "barryz2013@gmail.com", "login": "barryzee", "description": "", "uuid": 75148535 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "minimalistGODB", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "GO.db", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 5, "_updates": [ { "week": "2026-02", "n": 1 } ], "_tags": [ { "name": "1.1", "date": "2026-01-10" } ], "_stars": 0, "_contributors": [ { "user": "barryzee", "count": 2, "uuid": 75148535 } ], "_userbio": { "uuid": 75148535, "type": "user", "name": "barryzee", "followers": 0 }, "_downloads": { "count": 247, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/randomGODB" }, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/randomGODB.html", "manual.pdf" ], "_realowner": "barryzee", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2025-05-07" }, { "version": "1.1", "date": "2026-01-10" } ], "_exports": [ "addName2List", "characterizeDB", "compare2DB", "DBstats", "fractAncest", "geneListDistHitters", "hitters", "leafList", "mapPerGene", "postProcess", "randomGODB", "sizeGOcats" ], "_help": [ { "page": "addName2List", "title": "addName2List", "topics": [ "addName2List" ] }, { "page": "characterizeDB", "title": "characterizeDB", "topics": [ "characterizeDB" ] }, { "page": "compare2DB", "title": "compare2DB", "topics": [ "compare2DB" ] }, { "page": "DBstats", "title": "DBstats", "topics": [ "DBstats" ] }, { "page": "fractAncest", "title": "fractAncest", "topics": [ "fractAncest" ] }, { "page": "geneListDistHitters", "title": "geneListDistHitters", "topics": [ "geneListDistHitters" ] }, { "page": "hitters", "title": "hitters", "topics": [ "hitters" ] }, { "page": "leafList", "title": "leafList", "topics": [ "leafList" ] }, { "page": "mapPerGene", "title": "mapPerGene", "topics": [ "mapPerGene" ] }, { "page": "postProcess", "title": "postProcess", "topics": [ "postProcess" ] }, { "page": "randomGODB", "title": "randomGODB", "topics": [ "randomGODB" ] }, { "page": "sizeGOcats", "title": "sizeGOcats", "topics": [ "sizeGOcats" ] } ], "_rundeps": [ "minimalistGODB" ], 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