{ "_id": "6ac63fb3f511ae58c09a8b60", "Package": "randomGODB", "Version": "1.1", "Date": "2026-01-08", "Title": "Random GO Database", "Authors@R": "c(\nperson(\"Barry\", \"Zeeberg\", email = \"barryz2013@gmail.com\",\nrole = c(\"aut\", \"cre\")))", "Maintainer": "Barry Zeeberg ", "Author": "Barry Zeeberg [aut, cre]", "Description": "The Gene Ontology (GO) Consortium\n organizes genes into hierarchical\ncategories based on biological process (BP), molecular function\n(MF) and cellular component (CC, i.e., subcellular\nlocalization). Tools such as 'GoMiner' (see Zeeberg, B.R.,\nFeng, W., Wang, G. et al. (2003) )\ncan leverage GO to perform ontological analysis of microarray\nand proteomics studies, typically generating a list of\nsignificant functional categories. The significance is\ntraditionally determined by randomizing the input gene list to\ncomputing the false discovery rate (FDR) of the enrichment\np-value for each category. We explore here the novel\nalternative of randomizing the GO database rather than the gene\nlist.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "RoxygenNote": "7.3.3", "Config/testthat/edition": "3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 10:13:20 UTC", "User": "root" }, "Repository": "https://barryzee.r-universe.dev", "Date/Publication": "2026-01-10 06:10:02 UTC", "RemoteUrl": "https://github.com/cran/randomGODB", "RemoteRef": "HEAD", "RemoteSha": "9749507ead3065281c89f8989402c4cb023e8d27", "_user": "barryzee", "_type": "src", "_file": "randomGODB_1.1.tar.gz", "_fileid": "https://r2.ropensci.org/099e099ee85b70ef29035148d107fcdada6cc027b4889ea2cf07a3fde2f828e5", "_filesize": 910909, "_sha256": "099e099ee85b70ef29035148d107fcdada6cc027b4889ea2cf07a3fde2f828e5", "_expires": "2027-01-15T12:48:49.000Z", "_created": "2026-10-07T10:13:20.000Z", "_published": "2026-10-07T12:48:51.255Z", "_buildurl": "https://github.com/r-universe/barryzee/actions/runs/37605534785", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112741437363, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11474882121" }, { "job": 112741437317, "time": 123, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11475570062" }, { "job": 112741437274, "time": 122, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11482993216" }, { "job": 112741437320, "time": 118, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11483165950" }, { "job": 112740127180, "time": 208, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11475260854" }, { "job": 112741437431, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11474314478" }, { "job": 112741437290, "time": 386, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11474773417" }, { "job": 112741437507, "time": 352, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11475675231" }, { "job": 112741437360, "time": 378, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11474478838" } ], "_upstream": "https://github.com/cran/randomGODB", "_commit": { "id": "9749507ead3065281c89f8989402c4cb023e8d27", "author": "Barry Zeeberg ", "committer": "cran-robot ", "message": "version 1.1\n", "time": 1768025402 }, "_maintainer": { "name": "Barry Zeeberg", "email": "barryz2013@gmail.com", "login": "barryzee", "description": "", "uuid": 75148535 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "minimalistGODB", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "GO.db", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 5, "_updates": [ { "week": "2026-02", "n": 1 } ], "_tags": [ { "name": "1.1", "date": "2026-01-10" } ], "_stars": 0, "_contributors": [ { "user": "barryzee", "count": 2, "uuid": 75148535 } ], "_userbio": { "uuid": 75148535, "type": "user", "name": "barryzee", "followers": 0 }, "_downloads": { "count": 239, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/randomGODB" }, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/randomGODB.html" ], "_realowner": "barryzee", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2025-05-07" }, { "version": "1.1", "date": "2026-01-10" } ], "_exports": [ "addName2List", "characterizeDB", "compare2DB", "DBstats", "fractAncest", "geneListDistHitters", "hitters", "leafList", "mapPerGene", "postProcess", "randomGODB", "sizeGOcats" ], "_help": [ { "page": "addName2List", "title": "addName2List", "topics": [ "addName2List" ] }, { "page": "characterizeDB", "title": "characterizeDB", "topics": [ "characterizeDB" ] }, { "page": "compare2DB", "title": "compare2DB", "topics": [ "compare2DB" ] }, { "page": "DBstats", "title": "DBstats", "topics": [ "DBstats" ] }, { "page": "fractAncest", "title": "fractAncest", "topics": [ "fractAncest" ] }, { "page": "geneListDistHitters", "title": "geneListDistHitters", "topics": [ "geneListDistHitters" ] }, { "page": "hitters", "title": "hitters", "topics": [ "hitters" ] }, { "page": "leafList", "title": "leafList", "topics": [ "leafList" ] }, { "page": "mapPerGene", "title": "mapPerGene", "topics": [ "mapPerGene" ] }, { "page": "postProcess", "title": "postProcess", "topics": [ "postProcess" ] }, { "page": "randomGODB", "title": "randomGODB", "topics": [ "randomGODB" ] }, { "page": "sizeGOcats", "title": "sizeGOcats", "topics": [ "sizeGOcats" ] } ], "_rundeps": [ "minimalistGODB" ], "_vignettes": [ { "source": "randomGODB.Rmd", "filename": "randomGODB.html", "title": "Random GO Database", "author": "Barry Zeeberg [aut, cre]", "engine": "knitr::rmarkdown", "headings": [], "created": "2025-05-07 13:46:21", "modified": "2025-05-07 13:46:21", "commits": 1 } ], "_score": 3.1760912590556813, "_indexed": true, "_nocasepkg": "randomgodb", "_universes": [ "barryzee" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1", "date": "2026-10-07T10:15:30.000Z", "distro": "resolute", "commit": "9749507ead3065281c89f8989402c4cb023e8d27", "fileid": "https://r2.ropensci.org/b14bc7fc77842f9e2da72563598236701ffccf2c5c6203aef1eb6165561fb416", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/barryzee/actions/runs/37605534785" }, { "r": "4.6.1", "os": "linux", "version": "1.1", "date": "2026-10-07T10:15:28.000Z", "distro": "resolute", "commit": 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