Package: randomGODB
Version: 1.1
Date: 2026-01-08
Title: Random GO Database
Authors@R: c(
          person("Barry", "Zeeberg", email = "barryz2013@gmail.com",
                role = c("aut", "cre")))
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Author: Barry Zeeberg [aut, cre]
Depends: R (>= 4.2.0)
Imports: minimalistGODB, graphics, stats
Description: The Gene Ontology (GO) Consortium
        <https://geneontology.org/> organizes genes into hierarchical
        categories based on biological process (BP), molecular function
        (MF) and cellular component (CC, i.e., subcellular
        localization). Tools such as 'GoMiner' (see Zeeberg, B.R.,
        Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>)
        can leverage GO to perform ontological analysis of microarray
        and proteomics studies, typically generating a list of
        significant functional categories. The significance is
        traditionally determined by randomizing the input gene list to
        computing the false discovery rate (FDR) of the enrichment
        p-value for each category. We explore here the novel
        alternative of randomizing the GO database rather than the gene
        list.
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), GO.db
RoxygenNote: 7.3.3
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-06-09 07:16:43 UTC; root
Repository: https://barryzee.r-universe.dev
Date/Publication: 2026-01-10 06:10:02 UTC
RemoteUrl: https://github.com/cran/randomGODB
RemoteRef: HEAD
RemoteSha: 9749507ead3065281c89f8989402c4cb023e8d27