Package: HTGM3D 1.0.3
HTGM3D: Three Dimensional High Throughput 'GoMiner'
The Gene Ontology (GO) Consortium <https://geneontology.org/> organizes genes into hierarchical categories based on biological process (BP), molecular function (MF) and cellular component (CC, i.e., subcellular localization). Tools such as 'GoMiner' (see Zeeberg, B.R., Feng, W., Wang, G. et al. (2003) <doi:10.1186/gb-2003-4-4-r28>) can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. To capture the benefit of all three ontologies, I developed 'HTGM3D', a three-dimensional version of 'GoMiner'.
Authors:
HTGM3D_1.0.3.tar.gz
HTGM3D_1.0.3.zip(r-4.7)HTGM3D_1.0.3.zip(r-4.6)HTGM3D_1.0.3.zip(r-4.5)
HTGM3D_1.0.3.tgz(r-4.6-any)HTGM3D_1.0.3.tgz(r-4.5-any)
HTGM3D_1.0.3.tar.gz(r-4.7-any)HTGM3D_1.0.3.tar.gz(r-4.6-any)
HTGM3D_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
HTGM3D/json (API)
| # Install 'HTGM3D' in R: |
| install.packages('HTGM3D', repos = c('https://barryzee.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:fb7eab79fa. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 231 | ||
| source / vignettes | OK | 271 | ||
| linux-release-x86_64 | OK | 225 | ||
| macos-release-arm64 | OK | 90 | ||
| macos-oldrel-arm64 | OK | 107 | ||
| windows-devel | OK | 143 | ||
| windows-release | OK | 151 | ||
| windows-oldrel | OK | 120 | ||
| wasm-release | OK | 223 |
Exports:blackBodyRadiationColorscatNum3graphItHTGM3DHTGM3DdriverinsertCatSizeinteractWithGraph3DJaccard3plot3DmatpruneCatGenesshowGenessubMatDiffswhichOS
Dependencies:anytimeaskpassbase64encBHbitbit64bitopsbslibcachemcaToolsclicliprcommonmarkcpp11crayoncurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2glueGoMinergplotsgtablegtoolsHGNChelperhighrhmsHTGMHTGM2DhtmltoolshtmlwidgetshttpuvhttrisobandjaccardjquerylibjsonliteKernSmoothknitrlabelinglaterlifecyclelubridatemagrittrmemoisemimeminimalistGODBopensslotelpillarpkgconfigplyrprettyunitsprogresspromisespurrrqvalueR2HTMLR6randomGODBrappdirsRColorBrewerRcppreadrreshape2rglrlangrlistrmarkdownS7salesforcersassscalesshinysourcetoolssplitstackshapestringistringrsystibbletidyselecttimechangetinytextzdbutf8vctrsviridisLitevprintvroomwithrxfunXMLxml2xtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| blackBodyRadiationColors | blackBodyRadiationColors |
| catNum3 | catNum3 |
| HTGM3D data set | cluster52 |
| graphIt | graphIt |
| HTGM3D data set | Housekeeping_Genes |
| HTGM3D | HTGM3D |
| HTGM3Ddriver | HTGM3Ddriver |
| insertCatSize | insertCatSize |
| interactWithGraph3D | interactWithGraph3D |
| Jaccard3 | Jaccard3 |
| plot3Dmat | plot3Dmat |
| pruneCatGenes | pruneCatGenes |
| showGenes | showGenes |
| subMatDiffs | subMatDiffs |
| whichOS | whichOS |
| HTGM3D data set | x_cg |
| HTGM3D data set | x_l |
| HTGM3D data set | x_m11 |
| HTGM3D data set | x_mat |
| HTGM3D data set | x_mat3d |
